There's not one that is stronger than the other, only differences in gearing. But yeah, get the B000 since it's the transmission that's supposed to come with the manual version of your car.
Like Kensai said, you can get any 88-00 D-Series Tranny, but keep in mind that there are differences between tranny years and gearing for different models and body types.
88-91 years will be Cable.
92-00 years will be Hydraulic.
If you can't get a B000, I would at least recommend getting any 92-00.