Update:
Kind of loosing interest in this...
...but still working on it.
My father started sorting out the wires and began to solder some of them up to a fresh connector. I got the trans torque mount, AC torque mount and rear engine mount all installed and tightened up. Also attached the slave cylinder for the clutch and bled it so that's taken care of. Going to pick up a radiator + fan tomorrow from Osiris (fellow cc member) since my stock fan is seized and all the fins on my radiator are messed up.
Still need to install axles (one CV boot is torn so I'm waiting on a new one), find a fuel line, find fuel filter mounting bracket, more wiring, drill out broken off O2 sensor in exhaust manifold, find an exhaust, wire headlights, more sanding of the door+bumper, then paint them, install fogs etc etc.
Lots to do yet and summer is already over, ugh. Seems like this isn't going to get done before winter and I'll be stuck driving automatic still.